Yixuan Du

Platform-specific count-matrix preprocessing workflows for spatial transcriptomics data analysis

This study benchmarks preprocessing workflows for spatial transcriptomics data across multiple platforms and identifies platform-specific recommendations to improve downstream analysis.

Unifying physical and molecular coordinate systems across modalities in spatial biology

The paper introduces MAPS, a platform for unifying physical and molecular coordinates across modalities in spatial biology, demonstrating its effectiveness on diverse datasets and applications.

AI-enabled reconstruction of 3D spatial multi-omics at single-cell resolution

This paper introduces Histo3D-MO, a framework for reconstructing 3D spatial multi-omics maps at single-cell resolution, revealing spatial patterns in tumor microenvironments.

Robust integration of weakly anchored spatial multi-omics

This paper introduces SpaWeaver, a framework for robust spatial multi-omics integration using weak anchors, showing improved performance in handling real-world challenges and enabling new biological insights.