Author

Yuping Zheng

Chinese University of Hong KongORCID 0009-0005-0973-2480Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:drug response / drug discovery· 1 Approach:graph neural network· 1 Approach:large language model· 1 Approach:machine learning (classical)· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Yongqun Oliver HeiD· 2 shared Jie HuiD· 1 shared Jie ZhengiD· 1 shared Xingxian Li· 1 shared Zhigang WangiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

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2 shared papersBioinformatics

Yongqun Oliver HeORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 27, 2025

VaxjoGNN: A Graph Neural Network for Ontology-Grounded Vaccine Adjuvant Recommendation

Yuping Zheng, Yongqun He

This paper introduces VaxjoGNN, a graph neural network for recommending vaccine adjuvants based on biomedical ontologies, achieving significant improvements over random baseline.

2 citations

graph neural networkdrug response / drug discovery

𝕏 PostBluesky

BioinformaticsbioRxivPreprintNov 25, 2024

VaxLLM: Leveraging Fine-tuned Large Language Model for automated annotation of Brucella Vaccines

Xingxian Li, Yuping Zheng, Jie Hu…·Yongqun Oliver He

VaxLLM automates Brucella vaccine article classification and annotation with high accuracy, outperforming non-fine-tuned models and enabling structured data integration.

4 citations

large language modelmachine learning (classical)

𝕏 PostBluesky