Author

Yanqi Dong

Fudan UniversityORCID 0009-0005-2900-5467Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:experimental assay· 2 Assay:metagenomics· 2 Research Focus:database / resource· 1 Approach:deep learning· 1 Assay:long-read sequencing· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Wei‐Hua CheniD· 3 shared Xing‐Ming ZhaoiD· 3 shared Chuqing SuniD· 2 shared Jingchao CheniD· 2 shared Menglu Jin· 2 shared Na GaoiD· 2 shared Peer Bork BiD· 2 shared Xueyang Zhao· 2 shared

Activity by Year

2022-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Wei‐Hua ChenORCID

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3 papers

Recent·Most cited

BioinformaticsAdvanced SciencePeer-reviewedJun 29, 2023

Long-read sequencing reveals extensive DNA methylations in human gut phagenome contributed by prevalently phage-encoded methyltransferases

Chuqing Sun, Jingchao Chen, Menglu Jin…·Wei‐Hua Chen

The paper uses long-read sequencing to show that most gut phages are methylated, with many encoding their own methyltransferases, suggesting methylation helps phages evade host defenses.

20 citations

humanlong-read sequencing

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BioinformaticsbioRxivPreprintMar 10, 2023

VirRep: accurate identification of viral genomes from human gut metagenomic data via a hybrid language representation learning framework

Yanqi Dong, Wei‐Hua Chen, Xing‐Ming Zhao

DOI 10.1101/2023.03.10.532047

humanmetagenomics

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BioinformaticsbioRxivPreprintJul 3, 2022

Efficient recovery of complete gut phage genomes by combined short- and long- sequencing

Wei‐Hua Chen, Jingchao Chen, Chuqing Sun…·Xing‐Ming Zhao

The paper develops a method combining phage enrichment and long-read sequencing to recover more complete gut phage genomes from fecal samples, identifying a megabase phage and revealing hidden diversity.

5 citations

humanmetagenomics

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