Parsa Ghadermazi

The paper compares gut microbiomes of Tsimane and Hadza populations to show that many microbes co-migrated with humans globally, but are now vanishing in industrialized populations.

ZipStrain enables rapid and precise strain-resolved metagenomics by analyzing 2,754 human samples to identify strain-sharing gradients and gene variation.

This study uses MIg-Seq to analyze IgA targeting in infant gut microbiota, finding increased targeting of Bifidobacterium and diet-specific associations with IgA binding.

ADToolbox integrates metagenomics data into an enhanced ADM model to improve prediction of anaerobic digestion dynamics and VFA production.

This paper introduces a reinforcement learning algorithm to model microbial metabolism and evolution, showing improved prediction of stable metabolic strategies in heterogeneous communities.

kb_DRAM integrates DRAM tools into KBase for microbial and viral genome annotation and metabolic modeling through a user-friendly interface.