Author

Asif Khalak

ORCID 0009-0005-5751-5245Unclaimed ORCID profile · follow to get notified of new preprints

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Asif Khalak1 paper

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Assay:long-read sequencing· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Chen-Shan ChiniD· 2 shared Fritz Joachim SedlazeckiD· 1 shared Justin M. ZookiD· 1 shared Justin WagneriD· 1 shared Peter H. SudmantiD· 1 shared Sairam BeheraiD· 1 shared

Activity by Year

2019-2023 · peak 1/yr

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6 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Chen-Shan ChinORCID

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2 papers

Recent·Most cited

BioinformaticsNature MethodsPeer-reviewedJun 26, 2023

Multiscale Analysis of Pangenome Enables Improved Representation of Genomic Diversity For Repetitive And Clinical Relevant Genes

Chen-Shan Chin, Sairam Behera, Asif Khalak…·Justin M. Zook

The paper introduces a pangenome research toolkit to analyze complex genomic variations across multiple scales, improving the interpretation of repetitive and clinically relevant genes.

54 citationstop 3%

humanwhole-genome sequencing

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BioinformaticsbioRxivPreprintJul 17, 2019

Human Genome Assembly in 100 Minutes

Chen-Shan Chin, Asif Khalak

Indexing long reads with sparse hierarchical minimizers removes the all-to-all comparison step, letting Peregrine assemble a 30x human PacBio CCS dataset in roughly 100 wall-clock minutes.

97 citations

humanlong-read sequencing

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