Author

Haotian Ye

Stanford UniversityORCID 0009-0005-8486-0626Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:diffusion model· 1 Research Focus:drug response / drug discovery· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Cong XuiD· 1 shared Daniel Naveed TavakoliD· 1 shared Elham AziziiD· 1 shared Gordana Vunjak‐NovakoviciD· 1 shared Guy Y. GartyiD· 1 shared James ZouiD· 1 shared Kam W. LeongiD· 1 shared Raju TomeriD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Cong XuORCID

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1 paper

Recent·Most cited

BioinformaticsNature MethodsPeer-reviewedNov 3, 2025

Squidiff: Predicting cellular development and responses to perturbations using a diffusion model

Siyu He, Yuefei Zhu, Daniel Naveed Tavakol…·Kam W. Leong

Squidiff predicts transcriptomic changes across cell types in response to environmental stimuli using a diffusion model, enabling in silico screening for drug discovery and precision medicine.

39 citationstop 1%

bulk RNA-seqdiffusion model

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