Author

Lu Chen

Indiana University School of MedicineORCID 0009-0006-0306-6269Unclaimed ORCID profile · follow to get notified of new preprints

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Lu Chen9 papers · Fudan University

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Organism:human· 2 Assay:spatial transcriptomics· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:dimensionality reduction· 1 Assay:metabolomics· 1

Frequent Co-Authors

Anita R. CaroniD· 2 shared Josef HardiiD· 2 shared Katy BörneriD· 2 shared Adel EskarosiD· 1 shared Albert BurgeriD· 1 shared Amy BernardiD· 1 shared Andreas BueckleiD· 1 shared Angela R.S. KruseiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersBioinformatics

Anita R. CaronORCID

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2 papers

Recent·Most cited

BioinformaticsNature MethodsPeer-reviewedMar 13, 2025

Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage

Katy Börner, Philip D. Blood, Jonathan C. Silverstein…·Vilas Menon

This paper describes the construction and usage of the Human Reference Atlas (HRA) v2.0, which integrates multiscale data across 36 organs and provides tools for analysis and visualization.

51 citationstop 1%

humanspatial transcriptomics

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BioinformaticsScientific DataPeer-reviewedMar 27, 2023

Specimen, Biological Structure, and Spatial Ontologies in Support of a Human Reference Atlas

Bruce W. Herr, Josef Hardi, Ellen M. Quardokus…·Katy Börner

This paper introduces the Common Coordinate Framework Ontology (CCFO) v2.0.1 to integrate specimen, biological structure, and spatial data for the Human Reference Atlas, enabling interoperability and programmatic access.

16 citations

humanspatial transcriptomics

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