Author

Jingwen Ren

University of Southern CaliforniaORCID 0009-0006-0643-7061Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Jingwen Ren1 paper · Northeastern University

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Genetics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:variant calling· 3 Organism:human· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Assay:long-read sequencing· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Mark ChaissoniD· 3 shared Aaron M. WengeriD· 1 shared Alex R. HastieiD· 1 shared Alexandra P. LewisiD· 1 shared Allison RegieriD· 1 shared André CorveloiD· 1 shared Anna Okula BasileiD· 1 shared Arvis SulovariiD· 1 shared

Activity by Year

2021-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBioinformatics

Mark ChaissonORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 7, 2022

vamos: VNTR annotation using efficient motif sets

Jingwen Ren, Bida Gu, Mark Chaisson

The paper introduces vamos, a method to annotate VNTRs by selecting representative motifs, and applies it to 32 haplotype-resolved human genomes, finding an average of 3.1-4.0 alleles per locus.

4 citations

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsPLoS Computational BiologyPeer-reviewedJun 21, 2021

lra: the Long Read Aligner for Sequences and Contigs

Jingwen Ren, Mark Chaisson

lra improves long-read alignment by using sparse dynamic programming with a convex gap penalty, enhancing sensitivity and specificity for variant detection in PacBio and ONT data.

106 citationstop 1%

long-read sequencingstatistical model

𝕏 PostBluesky

GeneticsSciencePeer-reviewedFeb 25, 2021

De novo assembly of 64 haplotype-resolved human genomes of diverse ancestry and integrated analysis of structural variation

Peter Ebert, Peter A. Audano, Qihui Zhu…·Evan E. Eichler

The paper presents 64 haplotype-resolved human genomes using long-read sequencing and identifies structural variants, SV-eQTLs, and adaptive selection candidates.

701 citationstop 1%

humanwhole-genome sequencing

𝕏 PostBluesky