Author

Karina Ilchenko

AgroParisTechORCID 0009-0006-1350-0209Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Eduardo P. C. RochaiD· 1 shared Eugen PfeiferiD· 1 shared Rémy A. BonniniD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

3 top collaborators · 3 mutual co-author links

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1 shared paperGenomics

Eduardo P. C. RochaORCID

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1 paper

Recent·Most cited

GenomicsmBioPeer-reviewedFeb 9, 2026

Efficient detection and typing of phage-plasmids

Karina Ilchenko, Rémy A. Bonnin, Eduardo P. C. Rocha, Eugen Pfeifer

The paper introduces tyPPing, a method for detecting and typing phage-plasmids with high accuracy, outperforming existing tools in sensitivity and scalability.

3 citationstop 5%

DNA methylationwhole-genome sequencing

𝕏 PostBluesky