Author
National Institutes of HealthORCID 0009-0006-6658-9040Unclaimed ORCID profile · follow to get notified of new preprints
3 papers
Recent·Most cited
Maximillian G. Marin, Natalia Quinones‐Olvera, Hu Jin…·Maha R Farhat
Complete genomes from 151 clinical M. tuberculosis isolates show gene conversion between paralogs creating diversity hotspots in PE/PPE/ESX genes and T cell antigens, including PPE18.
Maximillian G. Marin, Natalia Quinones‐Olvera, Christoph Wippel…·Maha Reda Farhat
The paper evaluates pan-genome analysis methods using M. tuberculosis isolates, finding that annotation discrepancies and assembly quality affect results, and introduces panqc to address these issues.
Maximillian G. Marin, Roger Vargas, Michael Harris…·Maha Reda Farhat
The paper evaluates short-read variant calling accuracy in Mycobacterium tuberculosis using Illumina and PacBio data, finding high precision with optimized mapping thresholds and identifying 68% of excluded repetitive regions as accurately called.