Apurva Narechania

The paper examines how different milk pretreatment methods affect microbiome dynamics during cheese production using metagenomic sequencing and identifies key microbial contributors to cheese quality.

The paper quantifies pangenome complexity as information content, finding that free-living bacteria have higher genomic complexity than host-associated species.

The paper describes two new mantamonad species and provides transcriptomic and genomic data for one, offering insights into the CRuMs supergroup's evolutionary history.

This study shows that different genomic variant calling methods lead to inconsistent transmission inferences and phylogenies in Mycobacterium tuberculosis outbreaks.

Clusterflock uses a flocking algorithm to cluster orthologous gene families based on phylogenetic incongruence, outperforming existing methods in datasets with high missing data and rate heterogeneity.