Author

Eren Kumak

Bilkent UniversityORCID 0009-0007-3780-8176Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:database / resource· 2 Organism:human· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Özlen KonuiD· 2 shared Thomas DardeiD· 2 shared Abdul Moiz AftabiD· 1 shared Ayşe Gökçe KeşküşiD· 1 shared Merve Vural-ÖzdeniziD· 1 shared Said Tirkayi· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Özlen KonuORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 31, 2026

Network-based meta-analysis maps stage-dependent molecular programs in MASLD through MASLD-META NETWORK application

Eren Kumak, Thomas Darde, Özlen Konu

The paper performs a meta-analysis of MASLD RNA-seq datasets to identify stage-dependent molecular programs and provides an interactive web tool for exploring results.

DOI 10.64898/2026.08.26.747338

humanbulk RNA-seq

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BioinformaticsBMC BioinformaticsPeer-reviewedJun 11, 2026

TP53-META, a meta-analysis tool for comparative transcriptomics of TP53 dependency: Examples from target silencing and liver fibrosis

Ayşe Gökçe Keşküş, Eren Kumak, Merve Vural-Özdeniz…·Özlen Konu

TP53-META enables meta-analysis of TP53-related gene expression datasets to identify dependency patterns in transcriptomic changes across different conditions.

1 citation

humanbulk RNA-seq

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