Author

Lena Trnovec

University of LjubljanaORCID 0009-0007-4372-0648Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Blaž ZupaniD· 2 shared Gad ShaulskyiD· 2 shared Mariko Katoh‐KurasawaiD· 1 shared Miha Riley ŠtajdohariD· 1 shared Rachel N. AreyiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

5 top collaborators · 8 mutual co-author links

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2 shared papersBioinformatics

Blaž ZupanORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 31, 2026

Single-cell foundation models transfer across deep evolutionary distances

Lena Trnovec, Mariko Katoh‐Kurasawa, Rachel N. Arey…·Blaž Zupan

This paper evaluates the transferability of single-cell foundation models across deep evolutionary distances using developmental atlases of Dictyostelium discoideum and Caenorhabditis elegans.

DOI 10.64898/2026.10.28.762457

mousehuman

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BioinformaticsbioRxivPreprintSep 9, 2026

dictyExpress: an integrated browser for bulk and single-cell Dictyostelium transcriptomics

Lena Trnovec, Miha Riley Štajdohar, Gad Shaulsky, Blaž Zupan

dictyExpress 3.0 integrates bulk and single-cell transcriptomics data for Dictyostelium, offering interactive visualizations and cross-modal analysis.

DOI 10.64898/2026.09.04.748563

bulk RNA-seqscRNA-seq

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