Author

Mariko Katoh‐Kurasawa

Baylor College of MedicineORCID 0000-0002-6404-485XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Organism:Drosophila· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Blaž ZupaniD· 2 shared Gad ShaulskyiD· 2 shared Amanda Nicole WebbiD· 1 shared Hsing‐I HoiD· 1 shared Karin HrovatiniD· 1 shared Lena TrnoveciD· 1 shared Rachel N. AreyiD· 1 shared Shigenori HiroseiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 20 mutual co-author links

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2 shared papersBioinformatics

Blaž ZupanORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 31, 2026

Single-cell foundation models transfer across deep evolutionary distances

Lena Trnovec, Mariko Katoh‐Kurasawa, Rachel N. Arey…·Blaž Zupan

This paper evaluates the transferability of single-cell foundation models across deep evolutionary distances using developmental atlases of Dictyostelium discoideum and Caenorhabditis elegans.

DOI 10.64898/2026.10.28.762457

mousehuman

𝕏 PostBluesky

GenomicsGenome ResearchPeer-reviewedAug 1, 2021

Transcriptional milestones in Dictyostelium development

Mariko Katoh‐Kurasawa, Karin Hrovatin, Shigenori Hirose…·Gad Shaulsky

The paper identifies milestone genes and regulons in Dictyostelium development through time-series RNA-sequencing, revealing new gene expression patterns and developmental transitions.

32 citations

Drosophilabulk RNA-seq

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