Francesco Andreace

The paper introduces a method to perform set operations on k-mers using compacted representations, achieving efficient memory usage and high throughput.

The paper updates Giraffe to map both long and short reads to large pangenome graphs, showing improved speed and accuracy compared to existing tools.

The paper introduces the Backpack Quotient Filter (BQF), a data structure for querying k-mer abundance with improved space efficiency compared to the Counting Quotient Filter.

The paper introduces a tool called back_to_sequences that efficiently finds sequences containing specific k-mers from large datasets.

This work constructs the largest human pangenome graphs by integrating 52 haplotypes and two synthetic references, comparing five tools to evaluate their representation of genetic variation.