Author

Rishabh Kulkarni

Indian Institute of Science Education and Research PuneORCID 0009-0008-1102-9067Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:clustering· 2 Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Aadya Atreya· 1 shared Avik SenguptaiD· 1 shared Bhavesh Vasave· 1 shared Chaitanyanand B. KoppikeriD· 1 shared Khushi Salvi· 1 shared L S Shashidhara· 1 shared Madhura KulkarniiD· 1 shared Rahul KumariD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 22 mutual co-author links

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1 shared paperCancer Biology

Aadya Atreya

Mutual co-authors in cluster

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJun 11, 2026

SPARK: A Systems-level Computational Framework for Reconstructing Transcriptomic State Organisation in Lung Adenocarcinoma

Rishabh Kulkarni, Avik Sengupta, Rahul Kumar

This study develops SPARK, a framework to reconstruct transcriptomic states in LUAD, identifying modules and risk scores associated with survival and tumour biology.

DOI 10.64898/2026.06.08.730929

humanbulk RNA-seq

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Cancer BiologybioRxivPreprintDec 29, 2025

NELFA-mediated promoter-proximal pausing restrains YAP-driven transcription and shapes context-dependent outcomes in breast cancer

Bhavesh Vasave, Aadya Atreya, Rishabh Kulkarni…·Madhura Kulkarni

This study shows NELFA suppresses YAP-driven transcription in breast cancer, with context-dependent effects on survival outcomes.

DOI 10.64898/2025.12.29.696819

humanbulk RNA-seq

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