Author

Mathilde Girard

Centre National de la Recherche ScientifiqueORCID 0009-0008-1184-888XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

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Antoine LimassetiD· 1 shared Bastien CazauxiD· 1 shared Clément AgretiD· 1 shared Florian IngelsiD· 1 shared Léa VandammeiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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1 shared paperBioinformatics

Antoine LimassetORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintNov 21, 2025

Compressed inverted indexes for scalable sequence similarity

Florian Ingels, Léa Vandamme, Mathilde Girard…·Antoine Limasset

The paper introduces Onika, a system using inverted indexes for efficient sequence similarity search, improving scalability and performance over existing tools.

1 citation

bacteria (other)whole-genome sequencing

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