Author

Ala Jararweh

University of New MexicoORCID 0009-0008-3406-9221Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Approach:transformer / foundation model· 2 Assay:bulk RNA-seq· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1

Frequent Co-Authors

Avinash D SahuiD· 2 shared David ArredondoiD· 2 shared Kushal Virupakshappa· 2 shared Luis E. Tafoya· 2 shared Oladimeji Macaulay· 2 shared Genevieve Marie BolandiD· 1 shared Keith T. FlahertyiD· 1 shared Mikaela DicomeiD· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersBioinformatics

Avinash D SahuORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 17, 2024

DeepVul: A Multi-Task Transformer Model for Joint Prediction of Gene Essentiality and Drug Response

Ala Jararweh, My Nguyen Bach, David Arredondo…·Avinash D Sahu

DeepVul predicts gene essentiality and drug response using a multi-task transformer model trained on cancer transcriptome data, improving precision oncology by identifying treatment vulnerabilities.

DOI 10.1101/2024.10.17.618944

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintAug 7, 2024

LitGene: a transformer-based model that uses contrastive learning to integrate textual information into gene representations

Ala Jararweh, Oladimeji Macaulay, David Arredondo…·Avinash D Sahu

LitGene integrates textual information into gene representations using a transformer-based model with contrastive learning, improving disease risk gene prediction and interpretability.

1 citation

protein sequencetransformer / foundation model

𝕏 PostBluesky