Sarthak R. Mishra

The paper introduces the MSC-DL model to account for gene duplication, loss, and coalescence, showing it generates many more gene tree topologies than previous models.

The paper introduces a new method to detect and characterize introgression in large species trees by analyzing discordant attachment frequencies of gene trees, demonstrating its application in cichlids and Drosophila.

The paper re-evaluates evidence for Muller's ratchet in mitochondrial genomes using three species pairs, finding strong selection in mtDNA and no ratchet-like mutation accumulation.

This paper shows that machine learning can estimate recombination rates using only the allele frequency spectrum, without needing individual genotype data.

p-ClustVal improves clustering of scRNASeq data using a p-adic transformation, enhancing performance in 91% of cases across 30 experiments.

reconcILS improves gene tree-species tree reconciliation by incorporating incomplete lineage sorting through NNI events, outperforming existing methods on simulated and primate datasets.