Jiabei Cheng

The paper presents a verified spatial transcriptomics atlas built from public data, showing that increasing study diversity improves model transfer and reproducibility.

This study introduces DGP-AMIO, a graph attention network-based method that integrates multi-omics and gene interaction data to identify novel disease genes, achieving high performance across 20 disease datasets.

ProDMM is a multimodal sequence modeling framework that captures interdependencies between protein motifs, coding DNA, and regulatory elements to predict phenotypes and generate optimized regulatory sequences.

stFormer is a transformer model for spatial transcriptomics data that improves performance on cell clustering and gene function prediction compared to existing models.

GexMolGen generates hit-like molecules using gene expression signatures through a cross-modal approach, producing valid molecules from both in- and out-of-domain transcriptome data.