Author

Holly Brown

Washington University in St. LouisORCID 0009-0008-8157-5055Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genomics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Organism:C. elegans· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Organism:fungi (other)· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Chase MateusiakiD· 2 shared Michael R. BrentiD· 2 shared Tamara Lea DoeringiD· 2 shared Dhoha AbidiD· 1 shared Jeffery Jung· 1 shared Yu Sung KangiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 13 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Chase MateusiakORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

GenomicsmBioPeer-reviewedNov 28, 2025

Mapping the transcriptional regulatory network of a fungal pathogen by exploiting transcription factor perturbation

Dhoha Abid, Holly Brown, Chase Mateusiak…·Michael R. Brent

The paper maps the transcriptional regulatory network of Cryptococcus neoformans by analyzing TF deletions and identifies functionally orthologous TF pairs across species.

2 citations

fungi (other)bulk RNA-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintApr 19, 2023

Leveraging a new data resource to define the response of C. neoformans to environmental signals

Yu Sung Kang, Jeffery Jung, Holly Brown…·Michael R. Brent

The paper systematically analyzes how environmental signals affect capsule size and gene expression in C. neoformans using a large RNA-Seq dataset.

DOI 10.1101/2023.04.19.537239

C. elegansbulk RNA-seq

𝕏 PostBluesky