Author

Andrew M. Baumgartner

Institute for Systems BiologyORCID 0009-0008-8463-1219Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Assay:metabolomics· 2 Assay:proteomics· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Jennifer HadlockiD· 2 shared Leroy HoodiD· 2 shared Amy K. GleniD· 1 shared Bharana FernandoiD· 1 shared Bhargav VemuriiD· 1 shared Cory C. FunkiD· 1 shared Drew Witherington· 1 shared Gustavo GlusmaniD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersSystems Biology

Jennifer HadlockORCID

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Author profile →

3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 9, 2026

✦ In-depth digest

KRAKEN: A provenance-tracked knowledge graph for multiomic and wellness research

Amy K. Glen, Drew Witherington, Trent Leslie…·Noa Rappaport

A Biolink-compliant graph (∼15 million nodes, ∼113 million edges) adds RefMet and LIPID MAPS metabolite and lipid classifications, plus polygenic score and clinical data element entities, to Translator content.

DOI 10.64898/2026.08.18.745544

humanmetabolomics

𝕏 PostBluesky

Systems BiologyCommunications BiologyPeer-reviewedAug 18, 2025

Placental Network Differences Among Obstetric Syndromes Identified With An Integrated Multiomics Approach

Samantha N. Piekos, Oren Barak, Andrew M. Baumgartner…·Yoel Sadovsky

The paper uses a multiomics approach to identify placental network differences among obstetric syndromes, finding unique signatures associated with specific clinical outcomes.

3 citations

humanbulk RNA-seq

𝕏 PostBluesky

Systems BiologybioRxivPreprintJun 21, 2024

Fokker-Planck diffusion maps of multiple single cell microglial transcriptomes reveals radial differentiation into substates associated with Alzheimer's pathology

Andrew M. Baumgartner, Max Robinson, Todd Eliot Golde…·Cory C. Funk

The paper uses Fokker-Planck diffusion maps to analyze microglial transcriptomes, revealing substates associated with Alzheimer's pathology.

DOI 10.1101/2024.06.21.599924

humanscRNA-seq

𝕏 PostBluesky