Author

Johannes Gawron

SIB Swiss Institute of BioinformaticsORCID 0009-0008-8559-1212Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Organism:human· 1

Frequent Co-Authors

Nico BorgsmülleriD· 2 shared Niko BeerenwinkeliD· 2 shared Andreas E. MooriD· 1 shared Christian BeiseliD· 1 shared İlhan E. AcariD· 1 shared Jack KuipersiD· 1 shared Luís CunhaiD· 1 shared Marcel Fabian PohlyiD· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersBioinformatics

Nico BorgsmüllerORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintDec 6, 2024

DemoTape: Computational demultiplexing of targeted single-cell sequencing data

Nico Borgsmüller, Jack Kuipers, Johannes Gawron…·Niko Beerenwinkel

DemoTape is a computational method for demultiplexing targeted single-cell DNA sequencing data, showing improved performance over existing methods for RNA sequencing data.

5 citations

humanscRNA-seq

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BioinformaticsbioRxivPreprintNov 22, 2024

Robust and cost-efficient single-cell sequencing through combinatorial pooling

Johannes Gawron, Luís Cunha, Nico Borgsmüller, Niko Beerenwinkel

The paper introduces optimal combinatorial pooling strategies for single-cell sequencing to reduce costs while enabling robust sample identification using genetic profiles and pool compositions.

1 citation

scRNA-seqstatistical model

𝕏 PostBluesky