Reid Wagner

This study compares DDA-MS and DIA-MS for proteomic analysis of lung compartments in beryllium-related disease, finding DIA-MS provides better quantitative completeness and detects more low-abundance proteins.

The paper introduces a modular pipeline for neoantigen discovery, verification, and prioritization in cancer research using immunopeptidogenomic data.

This study compares Scribe and database search engines in metaproteomic analysis of a ground-truth microbiome dataset, finding Scribe detects more proteins and quantifies microbial composition more accurately.

The paper introduces a clinical metaproteomics workflow that enables analysis of host-microbe dynamics in disease by integrating mass spectrometry and bioinformatics tools.