Chikara Mizukoshi

CloneVI infers clonal structure from cell states in single-cell RNA-seq and ATAC-seq data, linking mitochondrial DNA mutations to specific cell states.

MUSE integrates multi-omics data across species to align cellular states while preserving species-specific features and regulatory module conservation.

scTREND is a hazard model that estimates cell-level risk across time and conditions without cell-type annotations, showing improved prediction in simulations and applications to cancer and COVID-19.

scSurv estimates individual cellular contributions to cancer patient survival using a deep generative model combined with Cox proportional hazards analysis.

DeepKINET estimates single-cell RNA splicing and degradation rates from scRNA-seq data, outperforming existing methods and revealing cellular heterogeneity in post-transcriptional regulation.