Author

Chaohui Li

City University of Hong KongORCID 0009-0009-6196-1191Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1

Frequent Co-Authors

Lingxi CheniD· 2 shared Ruikang Li· 2 shared Shuai Cheng LiiD· 2 shared Xikang FengiD· 2 shared Yuhao Qing· 2 shared Anton George HensseniD· 1 shared Biswanath ChowdhuryiD· 1 shared Guy NiriD· 1 shared

Activity by Year

2021-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersBioinformatics

Lingxi ChenORCID

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3 papers

Recent·Most cited

Cancer BiologyNature CommunicationsPeer-reviewedDec 20, 2025

Reconstructing the three-dimensional architecture of extrachromosomal DNA with ec3D

Biswanath Chowdhury, Kaiyuan Zhu, Chaohui Li…·Vineet Bafna

The paper introduces ec3D, a method to reconstruct 3D structures of ecDNA from Hi-C data, revealing spherical configurations and unique long-range interactions in cancer.

6 citations

humanHi-C

𝕏 PostBluesky

BioinformaticsBMC GenomicsPeer-reviewedNov 16, 2021

SCYN: Single cell CNV profiling method using dynamic programming

Xikang Feng, Lingxi Chen, Yuhao Qing…·Shuai Cheng Li

SCYN is a single-cell CNV segmentation method using dynamic programming, showing high accuracy and speed on scDNA datasets.

12 citations

humanscRNA-seq

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BioinformaticsbioRxivPreprintJun 10, 2021

scSVAS: CNV clonal visualization online platform for large scale single-cell genomics

Lingxi Chen, Yuhao Qing, Ruikang Li…·Shuai Cheng Li

scSVAS provides an online platform for real-time interactive visualization of single-cell copy number variation data, enabling efficient analysis and sharing of large-scale genomics results.

2 citations

whole-genome sequencingexperimental assay

𝕏 PostBluesky