Author

Yifan Yang

University of California, DavisORCID 0009-0009-6503-3595Unclaimed ORCID profile · follow to get notified of new preprints

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Yifan Yang7 papers · Monash University

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Approach:contrastive learning· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1 Research Focus:protein folding & dynamics· 1 Assay:protein sequence· 1

Frequent Co-Authors

Daoyun DingiD· 1 shared David H. MathewsiD· 1 shared Dehan Li· 1 shared Han ZhouiD· 1 shared Lingfeng ShiiD· 1 shared Sharon AviraniD· 1 shared Yang Young LuiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 11 mutual co-author links

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1 shared paperBioinformatics

Daoyun DingORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 4, 2026

Error-Controlled Discovery of Protein Interactions via Conformal Calibration

Yifan Yang, Dehan Li, Daoyun Ding…·Yang Young Lu

PPI-Caliper controls false discovery rate in protein interaction prediction using conformal calibration without retraining models.

DOI 10.64898/2026.11.03.764142

protein sequencecontrastive learning

𝕏 PostBluesky

BioinformaticsbioRxivPreprintSep 12, 2026

Markov models of SHAPE data improve secondary structure prediction

Yifan Yang, David H. Mathews, Sharon Aviran

This paper improves RNA secondary structure prediction by incorporating Markov models to capture context dependencies in SHAPE data, enhancing prediction accuracy.

DOI 10.64898/2026.09.10.750790

long-read sequencingstatistical model

𝕏 PostBluesky