Author

Gina Miku Oba

Institute for Quantitative Biosciences, The University of TokyoORCID 0009-0009-8151-5383Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Ryuichiro NakatoiD· 2 shared Che Lin· 1 shared Chien-Yu CheniD· 1 shared Jiankang WangiD· 1 shared Junichi Sakatsume· 1 shared Katsuhiko ShirahigeiD· 1 shared Luís Augusto Eijy NagaiiD· 1 shared Masashige BandoiD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Ryuichiro NakatoORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJul 25, 2024

ChromBERT: Uncovering Chromatin State Motifs in the Human Genome Using a BERT-based Approach

Seohyun Lee, Junichi Sakatsume, Gina Miku Oba…·Ryuichiro Nakato

ChromBERT identifies chromatin state motifs using a BERT-based model pre-trained on human chromatin data, revealing biologically relevant patterns across multiple tasks.

DOI 10.1101/2024.07.25.605219

humanChIP-seq

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GenomicsbioRxivPreprintMay 24, 2022

Context-dependent 3D genome regulation by cohesin and related factors

Ryuichiro Nakato, Toyonori Sakata, Jiankang Wang…·Katsuhiko Shirahige

This study investigates how cohesin and related factors regulate 3D genome structure and gene expression by analyzing depletion effects on chromatin, transcriptome, and epigenome data.

2 citations

humanChIP-seq

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