Revisiting evolutionary rate-time relationships
Abstract
Rates of molecular, phenotypic, and lineage diversification typically scale negatively with time interval of measurement, raising longstanding questions about time-dependency of evolutionary processes. These patterns and their potential meaning have recently re-entered evolutionary discussions. In this Perspective we revisit the general challenges in interpreting rate-time relationships. Much apparent temporal scaling of evolutionary rate is an inescapable outcome of plotting a ratio against its denominator, either directly or indirectly. Highly unlikely relationships between timescale and accumulated evolutionary change are required to produce anything other than negative rate-time relationships. Simulations reveal that constant rate evolutionary processes readily generate negative rate-time scaling relationships under many conditions, and that a range of rate-time scaling exponents can be generated by similar evolutionary processes. Reanalysis of six empirical datasets reveals unscaled magnitudes of evolution that are either unrelated to time and/or vary in their relationship with time, with over 99% of variation in rate-time relationships across six datasets explained by time variation alone. We further evaluated a recent hypothesis that evolutionary rate-time scaling reflects three modes of change, from micro- to macroevolutionary time scales using break-point regression, but we found no strong support for this hypothesis. Taken together, negative rate-time relationships are largely inevitable and difficult to interpret. In contrast, it is more straightforward to assess how evolutionary change accumulates with time.
02 /Specification & Classification
Click any tag to browse matching papers- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Macroevolutionary diversification rates show time-dependency
L. F. Henao Diaz, L. J. Harmon, … M. W. Pennell·bioRxiv·Jan 22, 2019
- Variability and scale-dependence in molecular evolution rate impacts interpretation of eukaryotic evolutionary histories
Erik Tamre, Lyle L. Nelson·bioRxiv·May 26, 2026
- Apparent timescaling of fossil diversification rates is caused by sampling bias
Bouwe Rutger Reijenga, Roger A. Close·Current BiologyPeer-reviewed·Jan 23, 2025
- Noise leads to the perceived increase in evolutionary rates over short time scales
Brian C. O’Meara, Jeremy M. Beaulieu·PLoS Computational BiologyPeer-reviewed·Sep 13, 2024
- Impact of Evolutionary Relatedness on Species Diversification and Tree Shape
T. Qin, L. Valente, R. Etienne·bioRxiv·Nov 9, 2023
- Theoretical foundation of the RelTime method for estimating divergence times from variable evolutionary rates