bioRxivBioinformaticsPreprint
SODA: Software to Support the Curation and Sharing of FAIR Autonomic Nervous System Data
Christopher MarroquiniD, Jacob ClarkiD, D. PortilloiD, Sanjay SoundarajaniD, Bhavesh J. PateliD
- Citations
- 2
Abstract
Since 2014, the National Institutes of Health (NIH)s Stimulating Peripheral Activity to Relieve Conditions (SPARC) Program has been supporting research and development of therapeutic devices that modulate electrical activity in the autonomic nervous system (ANS) to improve organ function, also known as bioelectronic medicine. To optimize the reusability of data resulting from ANS-related research, the SPARC Program also supported the development of guidelines for curating and sharing data in line with the FAIR (Findable, Accessible, Interoperable, Reusable) Principles. These guidelines are exhaustive to maximize FAIRness of data but as a result, they are difficult and time-consuming for researchers to implement. To address these challenges, we developed SODA (Software to Organize Data Automatically), an open source and free cross-platform desktop software that guides researchers step-by-step in preparing and sharing their ANS-related data according to the SPARC guidelines. SODA combines intuitive user interfaces with automation to streamline the process and reduce researchers time, effort, and error in making their data FAIR. We provide in this paper an overview of SODA and results of testing its performance. We also provide an overview of the impact of SODA which is, to our knowledge, the first researcher-oriented tool for making data FAIR.
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- SPARC Data Structure: Rationale and Design of a FAIR Standard for Biomedical Research Data
Anita E. Bandrowski, Jeffrey Sean Grethe, … Maryann Elizabeth Martone·bioRxiv·Feb 10, 2021
- SPARClink: an interactive tool to visualize the impact of the SPARC program
Sanjay Soundarajan, Sachira Kuruppu, … Monalisa Achalla·F1000ResearchPeer-reviewed·Jan 31, 2022
- Extending and using anatomical vocabularies in the Stimulating Peripheral Activity to Relieve Conditions (SPARC) program
Monique C. Surles-Zeigler, Troy Sincomb, … Maryann Elizabeth Martone·bioRxiv·Nov 15, 2021
- The SPARC DRC: Building a resource for the autonomic nervous system community
Mahyar Osanlouy, Anita E. Bandrowski, … Peter John Hunter·Frontiers in PhysiologyPeer-reviewed·Jun 24, 2021
- KnowMore: An Automated Knowledge Discovery Tool for the FAIR SPARC Datasets
Ryan Quey, Matthew A. Schiefer, … Bhavesh J. Patel·F1000ResearchPeer-reviewed·Nov 9, 2021
- Developing a Multiscale Neural Connectivity Knowledgebase of the Autonomic Nervous System
Fahim T. Imam, Tom Gillespie, … Maryann Elizabeth Martone·Frontiers in NeuroinformaticsPeer-reviewed·Mar 14, 2025