Maryann Elizabeth Martone

A layered standards framework for integrating single-cell and spatial omics data into brain cell atlases

This paper introduces a standards framework for integrating single-cell and spatial omics data into brain cell atlases, enabling interoperable and reusable knowledge-ready resources.

PRECISE TBI Model Catalog: Increasing Accessibility and Reproducibility in TBI research

The paper introduces a centralized catalog of preclinical TBI models to improve reproducibility and accessibility by consolidating metadata from published studies.

Identification of Sensory Fiber Types in Mouse Temporomandibular Joint Tissues

This study identifies sensory fiber types in mouse TMJ tissues using immunohistochemistry, finding peptidergic fibers dominate with minimal non-peptidergic nociceptors.

Developing a Multiscale Neural Connectivity Knowledgebase of the Autonomic Nervous System

The paper describes the development of SCKAN, a knowledgebase of autonomic nervous system connectivity, and its use in generating anatomical and functional maps.

Brain Injury Knowledge Ontology (BIKO) for traumatic brain injury: Formalizing concepts and methods used in translational traumatic brain injury research.

The paper develops BIKO, an ontology to standardize terminology and methodologies in TBI research to improve data comparison and translation from preclinical to clinical settings.

AtOM, an ontology model for standardizing use of brain atlases in tools, workflows, and data infrastructures

The paper introduces AtOM, an ontology model to standardize brain atlas representation, enabling interoperability and data integration across species and atlas versions.

The BRAIN Initiative Cell Census Data Ecosystem: A User's Guide

The paper provides a guide to the BRAIN Initiative Cell Census Network (BICCN) data ecosystem, its tools, and resources for analyzing brain cell types across species.

Open Data Commons for Preclinical Traumatic Brain Injury Research: Empowering Data Sharing and Big Data Analytics

The paper introduces ODC-TBI, a platform for sharing preclinical TBI data, enabling big data analytics and machine learning to address heterogeneity in TBI research.

The Neuron Phenotype Ontology: A FAIR Approach to Proposing and Classifying Neuronal Types

The paper introduces the Neuron Phenotype Ontology (NPO) to standardize neuron naming and classification across neuroscientific studies, enabling interoperability and knowledge integration.

Extending and using anatomical vocabularies in the Stimulating Peripheral Activity to Relieve Conditions (SPARC) program

The paper describes the development and implementation of a vocabulary extension pipeline for the SPARC program to improve FAIR data practices in autonomic nervous system research.

A multimodal cell census and atlas of the mammalian primary motor cortex

The paper generates a multimodal cell census and atlas of the mammalian primary motor cortex, revealing a unified molecular genetic landscape and cross-species taxonomy of cell types.

The SPARC DRC: Building a resource for the autonomic nervous system community

The paper describes the development of a resource for the autonomic nervous system community, including databases, connectivity maps, and simulation tools.

SPARC Data Structure: Rationale and Design of a FAIR Standard for Biomedical Research Data

This paper introduces the SPARC Data Structure (SDS), a FAIR standard for biomedical research data, and describes its rationale, design, and tools for implementation.

Uniform Resolution of Compact Identifiers for Biomedical Data

The paper describes the harmonization of identifier resolution services to enable persistent, machine-resolvable citations for biomedical data.