bioRxivBioinformaticsPreprint
A correlational study of ABCA3 and SCN4B as exercise-related biomarkers of patients with Stanford type A aortic dissection
Shuai Qiao, Tienan CheniD, Bingxin Xie, Yongyong Han, Bin Wang, Yuanyuan LiiD, Beibei Jia, Naishi WuiD
Abstract
BackgroundAccumulating evidence indicates that moderate exercise may reduce the incidence of Stanford type A aortic dissection (TAAD), but the specific mechanisms remain unclear. This study aims to identify exercise-related biomarkers in TAAD patients and to investigate their underlying mechanisms. MethodsTranscriptome data related to TAAD and exercise-related genes were obtained from publicly available databases. Candidate biomarkers for TAAD were identified through an integrative approach incorporating differential expression analysis, machine learning, and expression level assessment, leading to the construction of a diagnostic model. Subsequently, functional enrichment, immune infiltration, regulatory network analysis, and computational drug prediction were conducted to systematically investigate the pathological mechanisms and translational potential of the indentified biomarkers. ResultsABCA3 and SCN4B were identified as exercise-related biomarkers in TAAD progression. A nomogram incorporating these two biomarkers exhibited strong diagnostic performance for identifying the disease. Functional enrichment analysis revealed potential involvement of these biomarkers in disease progression through pathways including circadian rhythm regulation and ribosome biosynthesis. Additionally, immune cells like M1 macrophages and naive B cells, as well as regulatory factors including hsa-miR-1343-3p and XIST, were found to be involved in this process. Finally, zonisamide and MRS1097 were identified through computation prediction as potential therapeutic drugs. ConclusionABCA3 and SCN4B were identified as exercise-related biomarkers associatied with TAAD and represent potential valuable targets for both diagnosis and treatment strategies.
- organism: human
- assay: bulk RNA-seq
- research focus: differential expression
- research focus: gene regulatory network inference
- research focus: drug response / drug discovery
- approach: machine learning (classical)
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Verify Hub Genes of expression profile in aortic dissection
Weitie Wang, Qing Liu, … Kexiang Liu·bioRxiv·May 3, 2019
- CTHRC1 is a new therapeutic target and serum diagnostic biomarker for aortic dissection
Jiaxin Chen, Luzhang Ji, … Xiaoqing Wang·bioRxiv·Apr 19, 2025
- Modeling Thoracic Aortic Dissection Using Patient-Specific iPSCs Reveals VSMC Dysfunction and Extracellular Matrix Dysregulation
Peifeng Jin, Yubin Xu, … Yongyu Wang·Stem Cells InternationalPeer-reviewed·Jan 1, 2025
- Syndecan-1 is overexpressed in human thoracic aneurysm but is dispensable for the disease progression in vivo
S. Zalghout, S. Vo, … B. Richard·bioRxiv·Dec 16, 2021
- ACAN regulates VSMC mitochondrial homeostasis through the YAP1/TAZ pathway and contributes to the onset and progression of aortic dissection
Wenjie Fu, Yanlan Gao, … Y Li·bioRxiv·Sep 21, 2026
- Dysregulated Proteins in Plasma Distinguishing Syndromic from Non-syndromic Heritable Thoracic Aortic Disease
Bjørn Edvard Seim, Yusuf Khan, … Thor Ueland·bioRxiv·Nov 18, 2024