Sign in
Systems BiologyBioinformatics
Peer-reviewed journal article

Cooperative development of logical modelling standards and tools with CoLoMoTo

Aurélien NaldiiD, Pedro T Monteiro, Christoph Müssel, the Consortium for Logical Models and Tools, Hans A Kestler, Denis ThieffryiD, Ioannis Xenarios, Julio Saez-RodrigueziD, Tomas Helikar, Claudine ChaouiyaiD

Abstract

The identification of large regulatory and signalling networks involved in the control of crucial cellular processes calls for proper modelling approaches. Indeed, models can help elucidate properties of these networks, understand their behaviour, and provide (testable) predictions by performing in silico experiments. In this context, qualitative, logical frameworks have emerged as relevant approaches as demonstrated by a growing number of published models, along with new methodologies and software tools. This productive activity now requires a concerted effort to ensure model reusability and interoperability between tools. Here, we outline the logical modelling framework and present the most important achievements of the Consortium for Logical Models and Tools, along with future objectives. This open community welcomes contributions from all researchers interested in logical modelling or in related mathematical and computational developments.

PDFDOI

02 /Specification & Classification

Click any tag to browse matching papers

Reproducibility ledger

Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.

Sign in to file a reproducibility report.

Similarity Map
SelectedSame fieldCross-field
THISNoël '25Naldi '18Li '26Lubbock '21Medley '18Naldi '18
61% semantic matchBioinformatics
Vincent Noël, Aurélien Naldi, Laurence Calzone+2 more·Interface Focus·Aug 22, 2025· 7 citations