Céline Hernandez

The paper identifies 18 m6A sites in HIV-1 using Nanopore sequencing and reveals isoform-dependent methylation clusters and unique 2-LTR transcript modifications.

This study uses scRNA-seq to identify gene expression profiles of asexual and sexual merozoites in Plasmodium falciparum, revealing key genes involved in invasion and sexual commitment.

The paper investigates how the Fab-7 boundary element influences Abd-B gene activity in Drosophila genital discs by altering chromatin organization and promoting alternative promoter use.

Eoulsan 2 updates a workflow manager to support bulk, long-read, and single-cell transcriptomics analyses with improved infrastructure and module development.

This study benchmarks nine joint multi-omics dimensionality reduction methods using simulated and real cancer data, finding intNMF excels in clustering and MCIA shows consistent performance across contexts.

The paper introduces two computational methods for analyzing complex biological models and applies them to predict T cell responses to checkpoint inhibitors.

The paper develops a computational model of the Nodal and BMP2/4 signaling pathways in sea urchin embryos, showing BMP dominance and the importance of Smad activation rates in dorsal-ventral patterning.

The paper demonstrates the use of the CoLoMoTo Interactive Notebook to analyze a Boolean model of tumor cell invasion, predicting mutations associated with metastasis.

The paper introduces a framework for reproducible analysis of qualitative biological networks using an interactive notebook environment.

The paper introduces GINsim 3.0, a software tool for modeling and analyzing cellular regulatory networks using logical formalism, with a focus on the p53-Mdm2 network.