Tripal Developer Toolkit
Bradford J. CondoniD, Abdullah AlmsaeediD, Ming CheniD, Joe West, Margaret E. StatoniD
Abstract
Tripal is an open-source biological community database construction toolkit utilizing the content management system Drupal. Tripal is used to make biological, genetic and genomic data more discoverable, shareable, searchable, and standardized. As funding for community level genomics databases declines, Tripals open source codebase provides a means for sites to be built and maintained with a minimal investment in staff and new development. Tripal is ultimately as strong as the community of sites and developers that use it. We present a set of developer tools that will make building and maintaining Tripal 3 sites easier for new and returning users. These tools break down barriers to entry such as setting up developer and testing environments, acquiring and loading test datasets, working with controlled vocabulary terms, and writing new Drupal classes.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 4
- FWCI
- 1.06
- Field percentile
- top 14%
- Research Focus
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Building a community-driven bioinformatics platform to facilitate Cannabis sativa multi-omics research
Locedie Mansueto, Tobias Kretzschmar, … Graham J.W. King·bioRxiv·Oct 2, 2024
- TRGdb: a universal resource for exploration of taxonomically restricted genes in bacteria
Andrzej Zieleziński, Wojciech Dobrychlop, Wojciech Maciej Karlowski·bioRxiv·Feb 17, 2023
- Planemo: a command-line toolkit for developing, deploying, and executing scientific data analyses
Simon A. Bray, John M. Chilton, … Anton Nekrutenko·Genome ResearchPeer-reviewed·Feb 1, 2023
- traits.build: a data model, workflow and R package for building harmonised ecological trait databases
Elizabeth Hedi Wenk, Payal Bal, … Daniel S. Falster·Ecological InformaticsPeer-reviewed·Aug 16, 2024
- An open framework for biodiversity databases
Miklós Bán, Zsolt Végvári, Sándor Bérces·bioRxiv·Oct 16, 2014
- TaxonKit: a cross-platform and efficient NCBI taxonomy toolkit