Ramil Mauleon

The paper describes the development of a web platform for Cannabis sativa multi-omics research, integrating datasets and providing APIs for omics analyses.

The paper presents an HPC-based workflow for genome variant calling using GATK, demonstrating SNP detection in four plant species and identifying novel SNPs in rice.

The paper introduces RGI, a pan-genome database for Asian rice, integrating 16 reference genomes and transcriptome data to provide gene information and visualization tools.

The paper presents a chromosome-scale genome assembly and annotation for macadamia, improving contiguity and coverage for genomic studies.

The paper generates 12 new high-quality rice reference genomes to expand the genetic diversity coverage of cultivated rice, forming a comprehensive pan-genome resource with 16 reference sequences.

Rice Galaxy provides an open resource for plant science, enabling researchers to perform advanced genomic analyses using shared datasets and tools.