bioRxivImmunologyPreprint
Temporal Vascular Endothelial Growth Factor Sub-type gene Switching in SARS-CoV Pathogenesis. Interpretation through in vivo Murine C57BL Models
A. Rashid, G. Benakatti, F. Al-Obeidat, Z. A. Malik, J. Brierley, V. Sharma, A. Sharma, L. Gupta, H. Alkhazaimi, G. Shaikh, A. Al-Dubai, N. Quraishi, S. A. Zaki, W. Wael Hafez, A. Hussain
Abstract
This study examines temporal gene expression (GE) patterns in a murine model of SARS-CoV infection. We focused on a Temporal Gene Set (TGS) comprising pro-inflammatory genes (TNF, NFKB1, VEGF-A) and VEGF-B. A systematic search of the NCBI Geo database for MA15 (SARS-CoV) pulmonary studies using C57BL Wild (WT) mice and filtering according to TGS GE patterns eluded seven datasets for further analysis. Encompassing the GE profiles from these datasets alluded to a rising and falling pattern in TNF and NFKB1 GE. Also, our findings reveal a temporal decrease in VEGF-A GE coinciding with an increase in VEGF-B GE post-immunogenic stimulation. Notably, differential responses were observed with the MA15 dosage and in comparison, to other antigens (dORF6 and NSP16). Further, the human SARS-CoV-2 gene enrichment in this murine study confirms the MA15 murine models relevance for SARS research. Our study also suggests potential interactions between SARS-CoV-2 Spike protein and VEGF-related receptors, hinting at other pathophysiological mechanisms. Our results indicate severe inflammation may lead to a flattened VEGF-B GE response, influencing VEGF-Bs cell survival role. We underline the significance of considering VEGF-A/B interactions, particularly temporal differences, in manipulating angiogenic processes. Future research needs to consider temporal changes in VEGF-A and VEGF-B GE, in terms of time-associated gene-switching, in line with changing host inflammation.
- organism: mouse
- assay: bulk RNA-seq
- research focus: differential expression
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Longitudinal host transcriptional responses to SARS-CoV-2 infection in adults with extremely high viral load
V. Avadhanula, C. J. Creighton, … P. A. Piedra·bioRxiv·May 24, 2023
- Myeloid cell interferon responses correlate with clearance of SARS-CoV-2
D. K. Singh, E. Aladyeva, … D. Kaushal·bioRxiv·Jun 28, 2021
- Single-cell Transcriptome of Bronchoalveolar Lavage Fluid Reveals Dynamic Change of Macrophages During SARS-CoV-2 Infection in Ferrets
J. S. Lee, J.-Y. Koh, … S.-H. Park·bioRxiv·Nov 18, 2020
- Anti-Viral and Anti-Inflammatory Therapeutic Effect of RAGE-Ig Protein Against Multiple SARS-CoV-2 Variants of Concern Demonstrated in K18-hACE2 Mouse and Syrian Golden Hamster Models
N. Dhanushkodi, S. Prakash, … L. BENMOHAMED·bioRxiv·Jun 7, 2023
- SARS-CoV-2 infection suppresses ACE2 function and antiviral immune response in the upper respiratory tract of infected patients
L. Gutierrez-Chamorro, E. Riveira-Munoz, … E. Ballana·bioRxiv·Nov 18, 2020
- Transcriptional response of signalling pathways to SARS-CoV-2 infection in normal human bronchial epithelial cells