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Virophage-like viruses replicate with a candidate phycodnavirus of C. parva

George R ThomasiD, Ichiro Inamoto, Steven M. ShortiD

Abstract

TThe discovery of virophages and polinton-like viruses (PLVs) sparked studies of their hyperparasitic relationships with their associated giant viruses and hosts. To date, every cultured virophage and PLV depends on an Imitervirales helper virus. The freshwater alga Chrysochromulina parva is infected by viruses in the Imitervirales and Algavirales, and recent work showed that the PLV, CpV-PLV Moe, replicates via co-infection with the Imitervirales host CpV-BQ3. The other known PLVs, CpV PLV Larry and CpV PLV Curly, were subsequently isolated alongside CpV-BQ1, a putative Algavirales virus, raising the possibility that they depend on an Algavirales helper. To determine the nature of Larry and Curlys hyperparasitic relationships, infection experiments were conducted with each PLV and either CpV-BQ3 or CpV-BQ1. These experiments demonstrated that that neither Larry nor Curly replicated when introduced to C. parva alone, nor during mixed infections that included the Imitervirales virus BQ3. In contrast, the Algavirales virus CpV-BQ1 supported replication of both PLVs, with each increasing roughly 1000-fold over the course of infection while CpV-BQ1 replication was simultaneously reduced up to 100-fold. Together, these findings provide the first culture based evidence that PLV replication can be supported by an Algavirales helper and demonstrate that C. parva supports at least two distinct hyperparasitic relationships spanning different viral orders within the class Megaviricetes.

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In-depth summary

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Claude Opus 5.5 · xhigh effort · 7 Nov 2026 · from the full text of version 1 (30 Sept 2026) · CC BY 4.0

Two polinton-like viruses, Larry and Curly, replicated in C. parva cultures only with the Algavirales phycodnavirus CpV-BQ1, not with the Imitervirales virus CpV-BQ3, and they reduced BQ1 replication.

Cultured virophages and virophage-like viruses had so far been tied only to Imitervirales helpers; links to phycodnaviruses were inferred from metagenomics alone. This paper reports culture-based evidence of polinton-like viruses (PLVs) using an Algavirales virus as helper.

Key results

  1. ShownNeither Larry nor Curly replicates on its own in C. parva, and neither changes host growth.

    Host growth showed no difference from controls (p > 0.05), with cultures peaking near 3.5 × 10^6 cells mL^-1. PLV qPCR copies fell about 10-fold, from ~8 × 10^5 (Larry) and 1 × 10^5 (Curly) copies mL^-1 to ~1 × 10^4 by Day 21. · Results and discussion; Figure legends

  2. ShownThe Imitervirales virus BQ3, the helper of the PLV Moe, does not support Larry or Curly.

    BQ3 lysed the host (~10^5 vs ~2 × 10^6 cells mL^-1 in controls) and rose to ~10^8 copies mL^-1. Both PLVs stayed near inoculum levels (~5 × 10^5 to 10^6 copies mL^-1) for 21 days, and neither altered BQ3 replication (p > 0.025). · Results and discussion; Figure legends

  3. ShownBoth PLVs replicate when co-infecting with the phycodnavirus BQ1.

    Larry and Curly each rose roughly 1000-fold from their inoculum by Day 21 (p < 0.025). TEM of the infection stocks showed particles of ~110 nm (BQ1) and ~70 nm (PLVs). · Results and discussion; Electron Microscopy; Figure legends

  4. ShownCo-infection with either PLV suppresses BQ1 replication, a hyperparasitic pattern.

    BQ1 alone increased 10,000-fold (~10^5 to ~10^9 copies mL^-1) by Day 21, versus a 100-fold increase (~10^7 copies mL^-1) with Larry or Curly (p < 0.008). · Results and discussion; Statistical Analyses

  5. SuggestedThe PLVs' effect on BQ1-induced host lysis is unresolved: Larry may dampen it and Curly may not, but neither difference was significant.

    At Day 21, host density was 9.5 × 10^5 cells mL^-1 with BQ1 alone, 1.5 × 10^6 with BQ1 + Larry and ~6.4 × 10^5 with BQ1 + Curly (p > 0.05). · Results and discussion; Statistical Analyses

Methods, data and reproducibility

Triplicate C. parva cultures were infected with each PLV alone or with BQ1 or BQ3, and cell counts and viral gene copies (qPCR) were tracked for 21 days. Day 21 differences were tested with ANOVA and one-sided t-tests on log-transformed abundances.

  • Infection time courses of C. parva strain CCMP291 with Larry, Curly, BQ1, BQ3 and their combinations, plus uninfected controls · Chrysochromulina parva (freshwater alga) and its viruses · n = triplicate flasks per treatment; 21-day sampling
  • Transmission electron micrographs of the BQ1 + Larry and BQ1 + Curly stocks · Chrysochromulina parva viruses
Methods & tools
qPCR (5′ nuclease assay; PolB for BQ1 and BQ3, MCP for Larry and Curly), Haemocytometer cell counts, Hitachi HT7700 transmission electron microscope, Fiji, ANOVA with Tukey's HSD, One-sample t-tests with Bonferroni adjustment, Q-Q plots, Levene's test
Reproducibility gaps
No code, data repository or accession is given. qPCR primers, probes and conditions are deferred to another publication.
Limitations (3)
  • The effect of each PLV on BQ1-induced host lysis was not statistically significant. The authors suggest testing varying PLV densities relative to BQ1. · stated by the authors
  • Only one host strain, one roughly 1:1:1 inoculation ratio and three replicate flasks were used. Virus abundance is inferred from qPCR gene copies, and no genomic or sequencing data are presented here. · noted in this summary
  • The helper role of BQ1 rests on co-infection with stocks purified from a shared lysate, with particles distinguished by filtration, qPCR and TEM, not on a fully isolated BQ1 stock. · noted in this summary

Who should read:Read this if you study virophage or polinton-like virus host range, or hyperparasitism among giant viruses and algal viruses.

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