Raspberry Pi Powered Imaging for Plant Phenotyping
J. Tovar, J. S. Hoyer, A. Lin, A. Tielking, S. Callen, E. Castillo, M. Miller, M. Tessman, N. Fahlgren, J. Carrington, D. Nusinow, M. A. Gehan
Abstract
O_LIPremise of the study: Image-based phenomics is a powerful approach to capture and quantify plant diversity. However, commercial platforms that make consistent image acquisition easy are often cost-prohibitive. To make high-throughput phenotyping methods more accessible, low-cost microcomputers and cameras can be used to acquire plant image data.\nC_LIO_LIMethods and Results: We used low-cost Raspberry Pi computers and cameras to manage and capture plant image data. Detailed here are three different applications of Raspberry Pi controlled imaging platforms for seed and shoot imaging. Images obtained from each platform were suitable for extracting quantifiable plant traits (shape, area, height, color) en masse using open-source image processing software such as PlantCV.\nC_LIO_LIConclusion: This protocol describes three low-cost platforms for image acquisition that are useful for quantifying plant diversity. When coupled with open-source image processing tools, these imaging platforms provide viable low-cost solutions for incorporating high-throughput phenomics into a wide range of research programs.\nC_LI
02 /Specification & Classification
Click any tag to browse matching papers- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Smartphone image capture system and image analysis pipelines enable accurate and efficient phenotyping of spaced plant mapping populations
Stella Woeltjen, Molly Hanlon, … Allison J. Miller·bioRxiv·Jan 7, 2026
- PhenoImage: an open-source GUI for plant image analysis
- PlantCV v4: Image analysis software for high-throughput plant phenotyping
Haley Schuhl, Keely E. Brown, … Noah Fahlgren·The Plant Phenome JournalPeer-reviewed·Feb 16, 2026
- RhizoVision Crown: An Integrated Hardware and Software Platform for Root Crown Phenotyping
A. Seethepalli, H. Guo, … L. M. York·bioRxiv·Sep 1, 2019
- An automated, high-throughput method for standardizing image color profiles to improve image-based plant phenotyping
J. C. Berry, N. Fahlgren, … K. M. Veley·bioRxiv·Jun 22, 2018
- Custom built scanner and simple image processing pipeline enables low-cost, high-throughput phenotyping of maize ears
C. Warman, J. E. Fowler·bioRxiv·May 7, 2020