New PhytologistPlant BiologyPeer-reviewed journal article
The Arabidopsis splicing factor PORCUPINE/SmE1 orchestrates temperature-dependent root development via auxin homeostasis maintenance
Nabila El ArbiiD, Sarah Muniz NardeliiD, Jan ŠimuraiD, Karin LjungiD, Markus SchmidiD
Abstract
O_LIAppropriate abiotic stress response is pivotal for plant survival and makes use of multiple signaling molecules and phytohormones to achieve specific and fast molecular adjustments. A multitude of studies has highlighted the role of alternative splicing in response to abiotic stress, including temperature, emphasizing the role of transcriptional regulation for stress response. Here we investigated the role of the core splicing factor PORCUPINE (PCP) on temperature-dependent root development. C_LIO_LIWe used marker lines and transcriptomic analyses to study the expression profiles of meristematic regulators and mitotic markers, and chemical treatments, as well as root hormone profiling to assess the effect of auxin signaling. C_LIO_LIThe loss of PCP significantly alters RAM architecture in a temperature-dependent manner. Our results indicate that PCP modulates the expression of central meristematic regulators and is required to maintain appropriate levels of auxin in the RAM. C_LIO_LIWe conclude that alternative pre-mRNA splicing is sensitive to moderate temperature fluctuations and contributes to root meristem maintenance, possibly through the regulation of phytohormone homeostasis and meristematic activity. C_LI
- organism: Arabidopsis
- assay: bulk RNA-seq
- research focus: development & morphogenesis
- research focus: cell type annotation
- research focus: gene regulatory network inference
- approach: experimental assay
- Citations
- 7
- FWCI
- 1.48
- Field percentile
- top 19%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Arabidopsis thaliana LSM7 is essential for auxin-mediated regulation of SAUR genes and thermomorphogenesis
S. M. Nardeli, V. Zacharaki, … D. Goretti·bioRxiv·Mar 28, 2023
- Auxin-dependent acceleration of cell division rates regulates root growth at elevated temperature
H. Ai, J. Bellstaedt, … M. Quint·bioRxiv·Jun 22, 2022
- Shoot and root thermomorphogenesis are linked by a developmental trade-off
C. Gaillochet, Y. Burko, … W. Busch·bioRxiv·May 7, 2020
- Knockout of endoplasmic reticulum localized molecular chaperone HSP90.7 impairs seeding development and cellular auxin homeostasis in Arabidopsis
J. Noureddine, B. Mu, … R. Zhao·bioRxiv·Mar 6, 2023
- Time and temperature-resolved transcriptomic analysis of Arabidopsis splicing-related mutants
Sarah Muniz Nardeli, Nabila El Arbi, … Markus Schmid·bioRxiv·Nov 8, 2024
- Light and temperature-dependent developmental role of Auxin Binding Protein 1 (ABP1) in Arabidopsis thaliana
A. Patnaik, A. Behera, … K. C. Panigrahi·bioRxiv·Jan 3, 2024