GeneMolecular BiologyPeer-reviewed journal article
Expression of ERV3-1 in Leukocytes of Acute Myelogenous Leukemia Patients
So NakagawaiD, M. Kawashima, Yuji MiyatakeiD, Kai KudoiD, Ryutaro KotakiiD, Kiyoshi AndoiD, Ai KotaniiD
Abstract
Acute myelogenous leukemia (AML) is one of the major hematological malignancies. In the human genome, several have been found to originate from retroviruses, and some of which are involved in progression of various cancers. Hence, to investigate whether retroviral-like genes are associated with the development of AML, we conducted a transcriptome sequencing analysis of 12 retroviral-like genes of 150 AML patients using The Cancer Genome Atlas database. We found high expression of ERV3-1, an envelope gene of endogenous retrovirus group 3 member 1. In particular, blood and bone marrow cells of the myeloid lineage in AML patients, exhibited higher expression of ERV3-1 than those of the monocytic AML lineage. We also examined the protein expression of ERV3-1 by immunohistochemical analysis and found expression of ERV3-1 protein in 7 out of 12 AML patients, with a particular concentration observed at the membrane of some leukemic cells. Transcriptome analysis further suggested that upregulated ERV3-1 expression may be associated with chromosome 8 trisomy as anomaly was found to be more common among the high expression group compared to the low expression group. However, this finding was not corroborated by the immunohistochemical data. This discrepancy may have been caused, in part, by the small number of samples analyzed in this study. Although the precise associated molecular mechanisms remain unclear, our results suggest that ERV3-1 may be involved in AML development. HighlightsO_LIExpression of 12 retroviral-like genes in the human genome were analyzed using transcriptome data of 150 acute myelogenous leukemia (AML) patients. C_LIO_LIERV3-1, an envelope gene of endogenous retrovirus group 3 member 1, was found to uniquely show high expression level. C_LIO_LIMorphologic characteristics and chromosomal abnormalities are found to be related with the expression of ERV3-1. C_LI
- organism: human
- assay: bulk RNA-seq
- research focus: differential expression
- approach: statistical model
- Citations
- 11
- FWCI
- 0.63
- Field percentile
- top 29%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Endogenous retroviruses are a source of enhancers with oncogenic potential in acute myeloid leukemia
Özgen Deniz, Mamataz Ahmed, … Miguel Ramos Branco·Nature CommunicationsPeer-reviewed·Jul 14, 2020
- Altered enhancer-promoter interaction leads to MNX1 expression in pediatric acute myeloid leukemia with t(7;12)(q36;p13)
D. Weichenhan, A. Riedel, … C. Plass·bioRxiv·Sep 13, 2023
- The megakaryocytic transcription factor ARID3A suppresses leukemia pathogenesis
O. Alejo-Valle, K. Weigert, … J.-H. Klusmann·bioRxiv·Apr 26, 2021
- Aberrant MNX1 Expression Associated with t(7;12)(q36;p13) Pediatric Acute Myeloid 1 Leukemia Induces the Disease Through Altering Histone Methylation
A. Waraky, A. Ostlund, … L. Palmqvist·bioRxiv·Jun 10, 2022
- Loss of erythroblasts in acute myeloid leukemia causes iron redistribution with clinical implications
- Diagnostic value of blood gene expression-based classifiers as exemplified for acute myeloid leukemia
Stefanie Warnat‐Herresthal, Konstantinos Perrakis, … Joachim Ludwig Schultze·bioRxiv·Aug 1, 2018