A machine learning approach for quantifying age-related histological changes in the mouse kidney.
S. Sheehan, S. Mawe, M. Chen, J. Klug, W. C. Ladiges, R. Korstanje, J. M. Mahoney
Abstract
The ability to quantify aging-related changes in histological samples is important, as it allows for evaluation of interventions intended to effect health span. We used a machine learning architecture that can be trained to detect and quantify these changes in the mouse kidney. Using additional held out data, we show validation of our model, correlation with scores given by pathologists using the Geropathology Research Network aging grading scheme, and its application in providing reproducible and quantifiable age scores for histological samples. Aging quantification also provides the insights into possible changes in image appearance that are independent of specific geropathology-specified lesions. Furthermore, we provide trained classifiers for H&E-stained slides, as well as tutorials on how to use these and how to create additional classifiers for other histological stains and tissues using our architecture.This architecture and combined resources allow for the high throughput quantification of mouse aging studies in general and specifically applicable to kidney tissues.
02 /Specification & Classification
Click any tag to browse matching papers- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Photographic age gap is associated with frailty and predicts survival in laboratory mice
Kevin Perez, Clement Molina, … Marco Malavolta·bioRxiv·Nov 4, 2026
- Multi-scale histology reveals localized ageing signatures in normal human colon
Gilad Altshuler, Coral Teper, … Iris Barshack·bioRxiv·Oct 24, 2026
- Quantitative imaging of native tissue architecture combined with deep multi-omics reveals the spatial biology of kidney aging
William V Trim, Mariia Diakova, … Marc W W Kirschner·bioRxiv·Nov 2, 2026
- qMAP Enabled Microanatomical Mapping of Human Skin Aging
Kyu Sang Han, Inbal B. Sander, … Pei-Hsun Wu·bioRxiv·Apr 3, 2024
- Machine Learning Models Based on Histological Images from Healthy Donors Identify ImageQTLs and Predict Chronological Age
Ran Meng, William Zhu, … Mark Gerstein·Proceedings of the National Academy of SciencesPeer-reviewed·Nov 11, 2025
- Histological aging signatures enable tissue-specific disease prediction from blood
Ernesto Abila, Iva Buljan, … André F. Rendeiro·bioRxiv·Nov 14, 2024