Proceedings of the National Academy of SciencesGeneticsPeer-reviewed journal article
Reply To Lazaridis And Reich: Robust Model-Based Inference Of Male-Biased Admixture During Bronze Age Migration From The Pontic-Caspian Steppe
Amy GoldbergiD, Torsten GüntheriD, Noah A. RosenbergiD, Mattias JakobssoniD
Abstract
Comparing the sex-specifically inherited X chromosome to the autosomes in ancient genetic samples, we (1) studied sex-specific admixture for two prehistoric migrations. For each migration, we used several admixture estimation procedures--including ADMIXTURE model-based clustering (2)--comparing X-chromosomal and autosomal ancestry in contemporaneous Central Europeans, and interpreting greater admixture from the migrating population on the autosomes as male-biased migration. For migration into late Neolithic/Bronze Age Central Europeans (\"BA\") from the Pontic-Caspian steppe (\"SP\"), we inferred male-biased admixture at 5-14 males per migrating female.\n\nLazaridis & Reich (3) contest this male-biased migration claim. For simulated individuals, they claim that ADMIXTURE provides biased X-chromosomal ancestry estimates. They argue that if the bias is taken into account, the ...
- organism: human
- assay: whole-genome sequencing
- research focus: benchmarking
- approach: statistical model
- Citations
- 19
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Failure to Replicate a Genetic Signal for Sex Bias in the Steppe Migration into Central Europe
Iosif Lazaridis, David Reich·Proceedings of the National Academy of SciencesPeer-reviewed·May 5, 2017
- Beyond 2/3 and 1/3: the complex signatures of sex-biased admixture on the X chromosome
Amy Goldberg, Noah A Rosenberg·bioRxiv·Mar 14, 2015
- Autosomal admixture levels are informative about sex bias in admixed populations
Amy Goldberg, Paul Verdu, Noah A Rosenberg·bioRxiv·Jun 24, 2014
- Female-biased continental farmer ancestry contribution to the modern Japanese genome
Yusuke Watanabe, Yoshiki Wakiyama, … Hiroki Oota·bioRxiv·Jul 31, 2026
- Integrating sex-bias into studies of archaic admixture on chromosome X
E. T. Chevy, E. Huerta-Sanchez, S. Ramachandran·bioRxiv·Aug 30, 2022
- Assortative mating by population of origin in a mechanistic model of admixture
A. Goldberg, A. Rastogi, N. A. Rosenberg·bioRxiv·Aug 21, 2019