bioRxivBiophysics
Allosteric conformational ensembles have unlimited capacity for integrating information
Abstract
Integration of binding information by macromolecular entities is fundamental to cellular functionality. Recent work has shown that such integration cannot be explained by pairwise cooperativities, in which binding is modulated by binding at another site. Higher-order cooperativities (HOCs), in which binding is collectively modulated by multiple other binding events, appears to be necessary but an appropriate mechanism has been lacking. We show here that HOCs arise through allostery, in which effective cooperativity emerges indirectly from an ensemble of dynamically-interchanging conformations. Conformational ensembles play important roles in many cellular processes but their integrative capabilities remain poorly understood. We show that sufficiently complex ensembles can implement any form of information integration achievable without energy expenditure, including all HOCs. Our results provide a rigorous biophysical foundation for analysing the integration of binding information through allostery. We discuss the implications for eukaryotic gene regulation, where complex conformational dynamics accompanies widespread information integration.
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A discrete-to-continuous mathematical model for ensemble distributions of a ligand-interacting macromolecular species across milieux-dependent conformational states may offer insights into the genesis and progression of cooperative binding
Siddhartha Kundu·bioRxiv·Jul 1, 2026
- Allosteric signalling paths in hemoglobin: a protein dynamics network analysis
Emanuele Monza, George C. Blouin, … Vı́ctor Guallar·bioRxiv·Sep 10, 2017
- Cooperative Binding Mitigates the High-Dose HookEffect
R. Dutta Roy, C. Rosenmund, M. I. Stefan·bioRxiv·Jun 30, 2015
- Dynamic view of an allosteric intermediate in a positively cooperative dimer
Paul J. Sapienza, Trevor R. Mileur, … Andrew L. Lee·bioRxiv·Aug 21, 2026
- Elucidating the link between binding statistics and Shannon information in biological cooperative networks
K. BANERJEE, B. DAS·bioRxiv·Mar 28, 2024
- Functional Plasticity and Evolutionary Adaptation of Allosteric Regulation
M. Leander, Y. Yuan, … S. Raman·bioRxiv·Feb 10, 2020