Hackathons as essential tools in an interdisciplinary biological training - report from trainings for Sub-Saharan students

Abstract

Hackathons are collaborative, fast-paced events where participants from various fields work together to solve real-world problems. They are increasingly used in higher education to foster collaboration, problem-solving and applied computational skills, yet their role in interdisciplinary biological training remains under-documented. We report on the design and implementation of two computational biology summer schools in Kenya (2022, 2023), each culminating in a hackathon that integrated biological problems, quantitative methods, and coding. Both events targeted early-career researchers from multiple sub-Saharan countries and combined intensive teaching in programming and modelling with a time-bound group challenge using authentic marine conservation and synthetic epidemiological datasets. We describe the educational design, including its grounding in project-based learning, authentic learning, and Self-Determination Theory, and we document how performance-based assessment and structured participant feedback were used to evaluate learning outcomes. We present a critical reflective account of what worked, our teaching philosophy, and how hackathons can be embedded responsibly within biological curricula. We argue that, when embedded in sustained training and supported by appropriate mentoring, hackathons provide a practical and effective way to help biologists build computational skills, communicate across disciplines, and gain confidence in shaping their own research.