Author

Tobias Pfennig

Cluster of Excellence on Plant SciencesORCID 0000-0002-3825-2778Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 1 Scientific Communication & Education· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:software / tool· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Assay:imaging· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

Anna MatuszyńskaiD· 3 shared Marvin van AalstiD· 2 shared Anne-Christin PohlandiD· 1 shared Faraimunashe ChiroveiD· 1 shared Gábor BernátiD· 1 shared Jan ČervenýiD· 1 shared Marilyn RonohiD· 1 shared Szilvia Zita TóthiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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3 shared papersMicrobiology

Anna MatuszyńskaORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologyPhotosynthesis ResearchPeer-reviewedJan 19, 2026

Estimating the redox state of the plastoquinone pool in algae and cyanobacteria via OJIP fluorescence: perspectives and limitations

Tomáš Zavřel, Anne-Christin Pohland, Tobias Pfennig…·Jan Červený

This paper evaluates the OJIP fluorescence method for semi-quantitative estimation of PQ-redox in algae and cyanobacteria, showing its applicability to both dark- and light-acclimated samples.

4 citationstop 3%

imagingexperimental assay

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Systems BiologybioRxivPreprintMay 6, 2025

MxlPy - Python Package for Mechanistic Learning in Life Science

Marvin van Aalst, Tim Nies, Tobias Pfennig, Anna Matuszyńska

MxlPy is a Python package that combines mechanistic modelling with machine learning to provide explainable, data-informed solutions for biological research.

DOI 10.1101/2025.05.06.652335

statistical modelmachine learning (classical)

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Scientific Communication & EducationbioRxivPreprintMar 27, 2025

Hackathons as essential tools in an interdisciplinary biological training - report from trainings for Sub-Saharan students

Marvin van Aalst, Tobias Pfennig, Faraimunashe Chirove…·Anna Matuszyńska

This paper describes two computational biology summer schools in Kenya that used hackathons to train early-career researchers in interdisciplinary biological skills.

1 citation

experimental assaydatabase / resource

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