bioRxivBiochemistryPreprint
Efficient Multi-Label Attribute Classification and Recognition of Microbiological Bacteria Based on Deep Learning and model fine-tuning
Abstract
Bacterial vaginosis (BV) is the most common gynecological complaint affecting health of a large percentage of women worldwide. Traditional manual microscopy methods are expensive and time-consuming, to improve accuracy and efficiency, automated bacterial identification devices with detection intelligence algorithms are urgently needed. We propose a Fine-tuned SmallerVGG (FTS-VGG) deep convolutional network model based multi-label classification method for bacteria. Comparison experiments were deployed on several advanced backbone networks, including transfer learning on pre-trained VGG19, demonstrating that the proposed method achieves the advantages of being lighter, faster, more accurate and more efficient. Due to the high cost of time and expertise of experienced clinicians, we use random erasing for data augmentation to address the challenge of dataset collection and annotation, experiments demonstrate its robustness to occlusion. The proposed method has theoretical and practical implications, as well as the potential to be widely extended to other microscopic imaging applications.
- assay: imaging
- research focus: cell type annotation
- research focus: clustering
- research focus: differential expression
- research focus: cell-cell communication
- approach: deep learning
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Morphologic Classification and Automatic Diagnosis of Bacterial Vaginosisby Deep Neural Networks
- Rapid label-free identification of seven bacterial species using microfluidics, single-cell time-lapse phase-contrast microscopy, and deep learning-based image and video classification
Erik Hallström, Vinodh K. Kandavalli, … Anders Hast·PLoS ONEPeer-reviewed·Sep 8, 2025
- Label-free deep learning-based species classification of bacteria imaged by phase-contrast microscopy
Erik Hallström, Vinodh K. Kandavalli, … Carolina Wählby·PLoS Computational BiologyPeer-reviewed·Nov 13, 2023
- Label-free identification of bacterial species using adapted vision transformers
Erik Hallström, Vinodh K. Kandavalli, … Carolina Wählby·bioRxiv·Oct 10, 2026
- Automated Microbial Classification System based on Deep Convolutional Neural Networks using Images from Colony Picker
Sehyun Park, Jing Wui Yeoh, … Chueh Loo Poh·bioRxiv·Jun 29, 2023
- Machine learning identification of Pseudomonas aeruginosa strains from colony image data
J. B. Rattray, R. J. Lowhorn, … S. P. Brown·bioRxiv·Sep 2, 2022