bioRxivAnimal Behavior & CognitionPreprint
The eyelid and pupil dynamics underlying stress levels in awake mice.
Abstract
Stress is a natural response of the body to perceived threats, and it can have both positive and negative effects on brain hemodynamics. Stress-induced changes in pupil and eyelid size/shape have been used as a biomarker in several fMRI studies. However, there were limited knowledges regarding changes in behavior of pupil and eyelid dynamics, particularly on animal models. In the present study, the pupil and eyelid dynamics were carefully investigated and characterized in a newly developed awake rodent fMRI protocol. Leveraging deep learning techniques, the mouse pupil and eyelid diameters were extracted and analyzed during different training and imaging phases in the present project. Our findings demonstrate a consistent downwards trend in pupil and eyelid dynamics under a meticulously designed training protocol, suggesting that the behaviors of the pupil and eyelid can be served as reliable indicators of stress levels and motion artifacts in awake fMRI studies. The current recording platform not only enables the facilitation of awake animal MRI studies but also highlights its potential applications to numerous other research areas, owing to the non-invasive nature and straightforward implementation.
- organism: mouse
- assay: imaging
- research focus: host-pathogen & immune response
- research focus: cell type annotation
- research focus: clustering
- research focus: differential expression
- approach: deep learning
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A systematically optimized awake mouse fMRI paradigm
Wenjing Xu, Mengchao Pei, … Zhifeng Liang·bioRxiv·Nov 16, 2022
- Longitudinal Resting-State fMRI of Awake Mice During Habituation: Stress, Head Motion, and Functional Connectivity
Sang-Han Choi, Geun Ho Im, Seong-Gi Kim·Frontiers in NeurosciencePeer-reviewed·Feb 18, 2026
- Relating pupil diameter and blinking to cortical activity and hemodynamics across arousal states
Kevin L. Turner, Kyle W. Gheres, Patrick J. Drew·Journal of NeurosciencePeer-reviewed·Dec 14, 2022
- Mapping the bioimaging marker of Alzheimer's disease based on pupillary light response-driven brain-wide fMRI in awake mice
Xiaochen Liu, David Hike, … Xin Yu·bioRxiv·Dec 20, 2023
- High-resolution awake mouse fMRI at 14 Tesla
David Hike, Xiaochen Liu, … Xin Yu·eLifePeer-reviewed·Dec 20, 2024
- Pupillary oscillations accompany hand movement planning in naturalistic scenes
Sebastian Wiedenski, Marita Metzler, … Artur Pilacinski·bioRxiv·Dec 25, 2025