bioRxivEvolutionary Biology
Naturally segregating genetic variants contribute to thermal tolerance in a D. melanogaster model system.
P. A. Williams-Simon, C. Oster, J. A. Moaton, R. Ghidey, E. Ngoma, K. M. Middleton, E. G. King
Abstract
Thermal tolerance is a fundamental physiological complex trait for survival in many species. For example, everyday tasks such as foraging, finding a mate, and avoiding predation, are highly dependent on how well an organism can tolerate extreme temperatures. Understanding the general architecture of the natural variants of the genes that control this trait is of high importance if we want to better comprehend how this trait evolves in natural populations. Here, we take a multipronged approach to further dissect the genetic architecture that controls thermal tolerance in natural populations using the Drosophila Synthetic Population Resource (DSPR) as a model system. First, we used quantitative genetics and Quantitative Trait Loci (QTL) mapping to identify major effect regions within the genome that influences thermal tolerance, then integrated RNA-sequencing to identify differences in gene expression, and lastly, we used the RNAi system to 1) alter tissue-specific gene expression and 2) functionally validate our findings. This powerful integration of approaches not only allows for the identification of the genetic basis of thermal tolerance but also the physiology of thermal tolerance in a natural population, which ultimately elucidates thermal tolerance through a fitness-associated lens.
- organism: Drosophila
- assay: bulk RNA-seq
- research focus: gene regulatory network inference
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Genetic architecture of the thermal tolerance landscape of Drosophila melanogaster
Juan Soto, Francisco Pinilla, … Luis E. Castañeda·Molecular EcologyPeer-reviewed·Mar 4, 2025
- Early life-stage thermal resilience is determined by climate-linked regulatory variation
Joaquin C. B. Nunez, Sumaetee Tangwancharoen, … Brent L. Lockwood·Proceedings of the National Academy of SciencesPeer-reviewed·Jan 8, 2026
- Disparate patterns of thermal adaptation between life stages in temperate vs. tropical Drosophila melanogaster
B. L. Lockwood, T. Gupta, R. Scavotto·bioRxiv·Sep 22, 2017
- RT-qPCR Validation of Candidate Genes Underlying Thermal Adaptation in Drosophila subobscura
Marta A. Antunes, Margarida Matos, Pedro Simões·bioRxiv·Jul 10, 2025
- Spatiotemporal patterns of desiccation tolerance in natural populations of Drosophila melanogaster
Subhash Rajpurohit, Eran Gefen, … Paul S Schmidt·bioRxiv·Oct 7, 2016
- Correlated evolution between heat tolerance and thermal performance curves in Drosophila subobscura
A. Mesas, A. Jaramillo, L. E. Castaneda·bioRxiv·Dec 5, 2019