Bicolor angelfish (Centropyge bicolor) provides the first chromosome-level genome of the Pomacanthidae family
Chunhua LiiD, Xianwei YangiD, Libin ShaoiD, Rui ZhangiD, Qun LiuiD, Mengqi ZhangiD, Shanshan LiuiD, Shanshan PaniD, Weizhen XueiD, Congyan WangiD, Chunyan MaoiD, He ZhangiD, Guangyi FaniD
Abstract
The Bicolor Angelfish, Centropyge bicolor, is a tropical coral reef fish. It is named for its striking two-color body. However, a lack of high-quality genomic data means little is known about the genome of this species. Here, we present a chromosome-level C. bicolor genome constructed using Hi-C data. The assembled genome is 650 Mbp in size, with a scaffold N50 value of 4.4 Mbp, and a contig N50 value of 114 Kbp. Protein-coding genes numbering 21,774 were annotated. Our analysis will help others to choose the most appropriate de novo genome sequencing strategy based on resources and target applications. To the best of our knowledge, this is the first chromosome-level genome for the Pomacanthidae family, which might contribute to further studies exploring coral reef fish evolution, diversity and conservation.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 1
- FWCI
- 0.08
- Field percentile
- 34th percentile
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A chromosome-scale genome assembly of the false clownfish, Amphiprion ocellaris
Taewoo Ryu, Marcela Herrera, … Timothy Ravasi·G3 Genes Genomes GeneticsPeer-reviewed·Mar 30, 2022
- The chromosome-scale genome assembly of the yellowtail clownfish Amphiprion clarkii provides insights into melanic pigmentation of anemonefish
Billy Moore, Marcela Herrera, … Taewoo Ryu·G3 Genes Genomes GeneticsPeer-reviewed·Jan 10, 2023
- Whole genome assembly and annotation of the King Angelfish (Holacanthus passer) gives insight into the evolution of marine fishes of the Tropical Eastern Pacific
R. Gatins, C. F. Arias, … L. F. De Leon·bioRxiv·Nov 8, 2023
- The genome of the sapphire damselfish Chrysiptera cyanea: a new resource to support further investigation of the evolution of Pomacentrids
Emma Gairin, Saori Miura, … Vincent Laudet·GigabytePeer-reviewed·Dec 31, 2024
- Finding Nemo’s Genes: A chromosome-scale reference assembly of the genome of the orange clownfish Amphiprion percula
Robert Lehmann, Damien J. Lightfoot, … Timothy Ravasi·Molecular Ecology ResourcesPeer-reviewed·Sep 10, 2018
- First draft genome assembly of an iconic clownfish species (Amphiprion frenatus)
Anna Marcionetti, Victor Rossier, … Nicolas Salamin·Molecular Ecology ResourcesPeer-reviewed·Feb 17, 2018